From 0191204ca3bfd03b112f5e4facebec83575a1083 Mon Sep 17 00:00:00 2001 From: AHuffmyer Date: Wed, 9 Aug 2023 16:06:27 -0700 Subject: [PATCH] revised label for metabolite modules plot --- Mcap2020/Scripts/Metabolomics/2_metabolomics_WGCNA.Rmd | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/Mcap2020/Scripts/Metabolomics/2_metabolomics_WGCNA.Rmd b/Mcap2020/Scripts/Metabolomics/2_metabolomics_WGCNA.Rmd index a25de512..3287504c 100644 --- a/Mcap2020/Scripts/Metabolomics/2_metabolomics_WGCNA.Rmd +++ b/Mcap2020/Scripts/Metabolomics/2_metabolomics_WGCNA.Rmd @@ -531,7 +531,7 @@ expression_plots<-mME_meta%>% # group_by(Module) %>% ggplot(aes(x=lifestage, y=value, colour=group)) + facet_wrap(~ Module)+ - ylab("Mean Module Eigenegene") + + ylab("Module Expression") + geom_hline(yintercept = 0, linetype="dashed", color = "grey")+ geom_boxplot(width=.5, outlier.shape= NA, position = position_dodge(width = 0.5), alpha = 0.7) + stat_summary(fun=mean, geom="line", aes(group=lifestage, color = group), position = position_dodge(width = 0.5)) + @@ -549,6 +549,8 @@ expression_plots<-mME_meta%>% ggsave(filename="Mcap2020/Figures/Metabolomics/WGCNA/expression_eigengene.jpeg", plot=expression_plots, dpi=300, width=12, height=8, units="in") +ggsave(filename="Mcap2020/Figures/Metabolomics/WGCNA/expression_eigengene.pdf", plot=expression_plots, dpi=300, width=12, height=8, units="in") + head(mME_meta) ```